Skip to content

feat: add C implementation for stats/base/dists/binomial/quantile #4415

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 15 commits into
base: develop
Choose a base branch
from

Conversation

0PrashantYadav0
Copy link
Member

Resolves #3474

Description

What is the purpose of this pull request?

This pull request:

  • adds C implementation for @stdlib/stats/base/dists/binomial/quantile along with relevant tests, docs, examples and benchmarks.

Related Issues

Does this pull request have any related issues?

This pull request:

Questions

Any questions for reviewers of this pull request?

No.

Other

Any other information relevant to this pull request? This may include screenshots, references, and/or implementation notes.

No.

Checklist

Please ensure the following tasks are completed before submitting this pull request.


@stdlib-js/reviewers

Neerajpathak07 and others added 8 commits December 27, 2024 23:49
PR-URL: stdlib-js#4110
Reviewed-by: Athan Reines <[email protected]>

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: passed
  - task: run_c_examples
    status: passed
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: passed
  - task: run_c_benchmarks
    status: passed
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: passed
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: passed
---
…nto develop

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: na
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: na
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
…nto develop

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: na
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: na
  - task: lint_package_json
    status: passed
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: passed
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: passed
  - task: lint_javascript_benchmarks
    status: passed
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: passed
  - task: lint_c_examples
    status: passed
  - task: lint_c_benchmarks
    status: passed
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: na
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: passed
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: na
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: na
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: passed
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: passed
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: na
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: na
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: passed
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: passed
  - task: lint_package_json
    status: passed
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: passed
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: passed
  - task: lint_javascript_benchmarks
    status: passed
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: passed
  - task: lint_c_examples
    status: passed
  - task: lint_c_benchmarks
    status: passed
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: na
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
@stdlib-bot stdlib-bot added Statistics Issue or pull request related to statistical functionality. Needs Review A pull request which needs code review. labels Dec 31, 2024
@stdlib-bot
Copy link
Contributor

stdlib-bot commented Dec 31, 2024

Coverage Report

Package Statements Branches Functions Lines
stats/base/dists/binomial/quantile $\color{red}522/524$
$\color{green}+99.62\%$
$\color{red}61/62$
$\color{green}+98.39\%$
$\color{green}6/6$
$\color{green}+100.00\%$
$\color{red}522/524$
$\color{green}+99.62\%$

The above coverage report was generated for the changes in this PR.

@0PrashantYadav0
Copy link
Member Author

/stdlib update-copyright-years

@stdlib-bot stdlib-bot added the bot: In Progress Pull request is currently awaiting automation. label Jan 6, 2025
@stdlib-bot stdlib-bot removed the bot: In Progress Pull request is currently awaiting automation. label Jan 6, 2025
@0PrashantYadav0
Copy link
Member Author

@Planeshifter @kgryte this one is also similar to #4414 (same doubt)

---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: passed
  - task: lint_package_json
    status: na
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: na
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: na
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: passed
  - task: lint_c_examples
    status: passed
  - task: lint_c_benchmarks
    status: passed
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: passed
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: passed
  - task: run_c_benchmarks
    status: passed
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: passed
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: passed
---
…0/stdlib into binomial/quantile

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: passed
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: passed
  - task: run_c_benchmarks
    status: passed
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: na
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
---
type: pre_commit_static_analysis_report
description: Results of running static analysis checks when committing changes.
report:
  - task: lint_filenames
    status: passed
  - task: lint_editorconfig
    status: passed
  - task: lint_markdown
    status: passed
  - task: lint_package_json
    status: passed
  - task: lint_repl_help
    status: na
  - task: lint_javascript_src
    status: na
  - task: lint_javascript_cli
    status: na
  - task: lint_javascript_examples
    status: na
  - task: lint_javascript_tests
    status: na
  - task: lint_javascript_benchmarks
    status: passed
  - task: lint_python
    status: na
  - task: lint_r
    status: na
  - task: lint_c_src
    status: na
  - task: lint_c_examples
    status: na
  - task: lint_c_benchmarks
    status: na
  - task: lint_c_tests_fixtures
    status: na
  - task: lint_shell
    status: na
  - task: lint_typescript_declarations
    status: na
  - task: lint_typescript_tests
    status: na
  - task: lint_license_headers
    status: passed
---

---
type: pre_push_report
description: Results of running various checks prior to pushing changes.
report:
  - task: run_javascript_examples
    status: na
  - task: run_c_examples
    status: na
  - task: run_cpp_examples
    status: na
  - task: run_javascript_readme_examples
    status: passed
  - task: run_c_benchmarks
    status: na
  - task: run_cpp_benchmarks
    status: na
  - task: run_fortran_benchmarks
    status: na
  - task: run_javascript_benchmarks
    status: passed
  - task: run_julia_benchmarks
    status: na
  - task: run_python_benchmarks
    status: na
  - task: run_r_benchmarks
    status: na
  - task: run_javascript_tests
    status: na
---
@Planeshifter Planeshifter added the bot: Update Copyright Years Pull request needing the copyright years of its files updated. label Feb 9, 2025
@stdlib-bot stdlib-bot added bot: In Progress Pull request is currently awaiting automation. and removed bot: Update Copyright Years Pull request needing the copyright years of its files updated. labels Feb 9, 2025
@Planeshifter Planeshifter removed the bot: In Progress Pull request is currently awaiting automation. label Feb 9, 2025
@stdlib-bot stdlib-bot added the Good First PR A pull request resolving a Good First Issue. label Jun 23, 2025
- Fix TypeScript parameter documentation (p → r, correct return value)
- Add missing edge cases to C implementation (p=0, p=1, n=0)
- Add TODO comment highlighting algorithm inefficiency

NOTE: The C implementation uses a naive brute-force algorithm that is
mathematically different from the sophisticated Cornish-Fisher expansion
used in the JavaScript version. This needs a complete rewrite for production use.
…ithm

- Replace naive brute-force algorithm with sophisticated Cornish-Fisher expansion
- Use binomial CDF for efficient search instead of computing PMF in loop
- Add required dependencies: sqrt, round, erfcinv, sqrt-two constant, binomial/cdf
- Implement same algorithm as JavaScript version for consistency
- Dramatically improve performance and numerical stability for large n

This fixes the critical algorithmic flaw where the C implementation was
completely different from the JavaScript version and would fail for large n.
@0PrashantYadav0
Copy link
Member Author

0PrashantYadav0 commented Jun 25, 2025

@Planeshifter I think we have a problem here. This package depends on the C implementation of binomial/cdf, which in turn depends on math/base/special/betainc, and that depends on math/base/special/kernel-betainc, which itself depends on many other packages.

@kgryte Any thought on how to proceed.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Good First PR A pull request resolving a Good First Issue. Needs Review A pull request which needs code review. Statistics Issue or pull request related to statistical functionality.
Projects
None yet
Development

Successfully merging this pull request may close these issues.

[RFC]: Add C implementation for @stdlib/stats/base/dists/binomial/quantile
4 participants